In Silico Analysis to Metabolomics

November 20, 2018 | Author: onlinebioinformatics | Category: Metabolomics, Metabolism, Gas Chromatography, High Performance Liquid Chromatography, Earth & Life Sciences
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BH[U@K^L[B@H ‥

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j`onl~on jn{de`ob{n| ‥

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Lb{ud{n Dodhbhn

JN[DE@OBL JBLU@DUUDR\ H`ujdo Eno`s H`ujdo De`vn H`uujdo De|nh{ Yd{bnh{ 4 Yd{bnh{ 5 Yd{bnh{ < Yd{bnh{ ; Yd{bnh{ > Yd{bnh{ 6 Yd{bnh{ 3 Yd{bnh{ = Yd{bnh{ 2 Yd{bnh{ 49 Yd{bnh{ 44 Yd{bnh{ 45 Yd{bnh{ 4< Yd{bnh{ 4; Yd{bnh{ 4>

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[mn ‟@jbl|‚ `f H~{ub{b`h

Eb`dl{bvn F``k L`jy`hnh{

H ~ { u  b c n h ` j b l |

H~{ubcnhn{bl|

KHD

H~{ub{b`hdo Nybcnhn{bl| UHD

H~{ub{b`hdo [udh|luby{`jbl|

Ymnh`{ryn Yu`{nbh

Yu`{n`jbl| Jn{de`o`jbl|

Jn{de`ob{n

H~{ub{b`hdo Jn{de`o`jbl|

Eb`dl{bvn F``k L`jy`hnh{

H ~ { u  b c n h ` j b l |

H~{ubcnhn{bl|

KHD

H~{ub{b`hdo Nybcnhn{bl|

Jn{de`o`jbl| UHD

H~{ub{b`hdo [udh|luby{`jbl|

Jn{de`ob{n

Yu`{nbh

Yu`{n`jbl| Ymnh`{ryn

Ldh Jn{de`o`jbl| \mnk Obcm{ `h {mn|n < H~{ub{b`h Unod{nk Eb`jdugnu| De|`uenk K`|n

Bh{dgn `f Kbn{dur L`h|{b{~nh{

Mndo{m Nffnl{| ' dhk *

Bhdl{bvn Jn{de`ob{n Eb`o`cbldoor Nffnl{bvn K`|n

\~|lny{bebob{r -Cnhn{bl/ Nhvbu`hjnh{"

Do{nunk \{u~l{~un/ \{u~l{~un F~hl{b`h

Nduor Eb`o`cbl Nffnl{

LDH JN[DE@O@JBL\ YU@VBKN LO^N\  DE@^[  DE @^[ [MN [MN YU@CUN\\B@H YU@CUN\\B@H @F @F KB\ND KB\ND \N Hd{~udo Mb|{`ur `f Kb|nd|n

[und{jnh{ Mb|{`ur

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Nhvbu`hjnh{ ' Obfn|{ron

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Nduor Kn{nl{b`h Cnhn{bl Ub|g

Eb`jdugnu|

T~dob{r @f Obfn

JN[DE@O@JBL\1 DYYOBLD[B@H\ ‥



Bknh{bfbld{b`h `f jn{de`obl eb`jdugnu| {md{ lmdhcn d| dh bhkbld{`u `f {mn yun|nhln `f kb|nd|n `u bh un|y`h|n {` ku~c*ed|nk bh{nuvnh{b`h( Kn{nujbhd{b`h `f {mn nffnl{ `f eb`lmnjbldo `u nhvbu`hjnh{do |{un||n| `h yodh{| `u jblu`en|

DYYOBLD[B@H\ DYYOBLD [B@H\ -L@H[‒K" ‥





Edl{nubdo lmdudl{nubqd{b`h| M~jdh mndo{m d||n||jnh{| -y`{nh{bdo f`u ‟{udh|od{b`hdo un|ndulm‚0" Jn{de`obl nhcbhnnubhc

Jn{de`o`jbl| Dyyobld{b`h| Kbdch`|b| Kb|nd|n -n(c( l`u`hdur mndu{ kb|nd|n"( [`}bl`o`cr F~hl{b`hdo cnh`jbl| D|lubebhc f~hl{b`h| {` cnhn| \r|{nj| eb`o`cr Bh{ncud{b`h sb{m kd{d |n{| fu`j `{mnu `jbl|(

@[MNU DYYOBLD DYYOBLD[B@H\ [B@H\ ‥

Cnhn{bl Kb|nd|n [n|{| [n|{|



F``k & Envnudcn [n|{| [n|{|



H~{ub{b`hdo Dhdor|b|



H~{udln~{ H~{ud ln~{bld bldoo Dhdo Dhdor|b| r|b|



Lobhbldo Eo``k Dhdor|b|



Ku~c Ymnh`{rybhc



Lobhbldo ^ubhdor|b|



Sd{nu T~dob{r [n|{bhc



Lm`on|{nu`oo [n|{bhc Lm`on|{nu` [n|{bhc



Yn{u`lmnjbldo Dhdor|b|



Ku~c L`jyobdhln



Fnujnh{d{b`h Fnujnh{d{ b`h J`hb{`ubh



[`}bl`o`cr [n|{bhc



Lobhbldo [ubdo [n|{bhc [n|{bhc





[udh|yodh{ J`hb{`ubhc JU\ dhk fJUB

Jn{de`o`jbl| dyyu`dlmn| mdvn ennh sbknor ~|nk {` yu`vbkn d ymnh`{rybl kn|luby{b`h `f d lnoo d| d f~hl{b`h `f {bjn dhk`u l`hkb{b`h er d |n{ `f jn{de`ob{n|( Lmdhcn| bh onvno| `f jn{de`obl bh{nujnkbd{n| `f d |nt~nh{bdo |nubn| `f undl{b`h| dun `f{nh j`un yu`h`~hlnk {mdh {mn lmdhcn| bh nhqrjd{bl gbhn{bl| `u bhkbvbk~do fo~}n|( F`u {mb| und|`h/ jn{de`o`jbl| b| l`h|bknunk d |nh|b{bvn {``o f`u {mn |{~kr `f cnh`{ryn* ymnh`{ryn l`uunod{b`h| d| snoo d| {mn ymdujdl`o`cbldo dhk {`}bl`o`cbldo nffnl{| `f ku~c|(

KD[ KD [DED\ DED\N\ N\ F@U JN[DE@O@JB JN[DE@O@JBL\ L\

GNCC ‥

GNCC b| d |~b{n `f kd{ded|n|(



YD[MSDR



m`ok| {mn l~uunh{ gh`sonkcn `h j`onl~odu bh{nudl{b`h hn{s`ug|/



bhlo~kbhc jn{de`obl jn{de`obl yd{msdr|/ unc~od{`ur unc~od{`ur yd{msdr|/dhk j`onl~odu l`jyon}n|(



CNHN\



b| d l`oonl{b`h `f cnhn ld{do`c| f`u doo {mn l`jyon{n cnh`jn| dhk |`jn



ydu{bdo cnh`jn|( Ndlm cnhn ld{do`c b| l`jy~{d{b`hd l`jy~{d{b`hdoor oor knubvnk fu`j y~eobl



un|`~uln|/ dhk b| jdh~door jdh~door undhh`{d{nk undhh`{d{nk f`u unl`h|{u~l{b`h `f GNCC yd{msdr|(



GNCC CNHN\ b| d||`lbd{nk sb{m GNCC CNH@JN l`h{dbhbhc lmu`j`|`jn jdy|/



G@ f`u jdh~door l~ud{nk `u{m`o`c `u{m`o`c cu`~y|/ dhk GNCC \\KE f`u l`jy~{d{b`hdoor l`jy~{d{b`hdoor



cnhnud{nk `u{m`o`cyd `u{m`o`cydudo`c udo`c lo~|{nu| dhk cnhn cnhn lo~|{nu|(



L@JY@^HK



CORLDHUNDL[B@H l`h{dbh| bhf`ujd{b`h de`~{ lmnjbldo



l`jy`~hk| dhk undl{b`h|(

GNCC1* GNCC 1* OBCDH OBCDHK K KD[ KD[DED\ DED\N N ‥



OBCDHK Kd{ded|n `f Lmnjbldo L`jy`~hk| dhk Undl{b`h| bh Eb`o`cbldo Yd{msdr| yu`vbkn {mn obhgdcn en{snnh lmnjbldo dhk eb`o`cbldo d|ynl{| `f obfn bh {mn



obcm{ `f nhqrjd{bl undl{b`h|(



[mn kd{ded|n l`h|b|{| `f f`~u |nl{b`h|1



L@JY@^HK/ CORLDH/ UNDL[B@H/ dhk NHQRJN(

F@@K L@JY@HNH[ KD[DED\N

\@F[S \@ F[SDUN\ DUN\ F@U JN[ N[DE@ DE@O@J O@JBBL\

OB\[ @F @[MNU \@F[SDUN\ ‥







jqjbhn dhk jqjbhn5 jqjbhn jqjbhn5 -m{{y1jqjb -m{{y1jqjbhn(|` hn(|`~ulnf ~ulnf`uc `ucn(hn{ n(hn{" " * jq}j jq}jo/ o/ jqkd{d/ hn{LKF hn{LK F dhk ]Ldobe ]Ldobe~u ~u kd{d -OL*J\ -OL*J\// CL*J\/ CL*J\/ J\ J\ kd{d" kd{d" jn{Dobch -UBGBO -UBGBO[ [*S^U Bh|{b{~{n `f F``k \dfn{r" * OL*J\ dhk CL*J\ kd{d EbhEd|n EbhEd |n -fbnm -fbnmhode hode(~lkd (~lkdvb|(n vb|(nk~" k~" }lj| dhk }lj| }lj|5 5 -\luby -\lubyy|" y|" * hn{LK hn{LKF F kd{d -OL*J -OL*J\/ \/ CL*J\/ CL*J\/ J\ dhk J\5 kd{d"



JdugnuOrh} JdugnuO rh} -S -Sd{nu|" d{nu|" -OL*J\ kd{d"



Eo~F~|n Eo~F~ |n -Eo~n -Eo~nCh`j Ch`jn" n" * f`u J\ dhk dhk HJU HJU kd{d kd{d



\ynlDobch ^hbv \ynlDobch ^hbvnu|b{ nu|b{r r `f @}f`uk @}f`uk -Ad|` -Ad|`h h S`hc" S`hc" * Dobc Dobchjnh hjnh{{ `f \NOKB/ \NOKB/ JDOKB/ HJU/ UDJDH/ BU -vbd [][ bjy`u{"



MbUn| MbU n| -L` -L`o~j o~jebd ebd ^hbvn ^hbvnu|b u|b{r {r Jnkbld Jnkbldoo Lnh{nu" Lnh{nu" * f`u HJU HJU kd{d kd{d



j|Bh|ynl{ -Yu`{n`jbl| Funk M~{lmbh|`h M~{lmbh|`h Ldhlnu Lnh{nu" Lnh{nu"



Yu`cnhn| Yu`c nhn|b| b| YC69 YC699 9 -H`hobhnd -H`hobhndu" u" * f`u JDOKB JDOKB dhk \NOKB \NOKB jd|| |ynl{ud |ynl{ud



ldJd||Lod|| ldJd| |Lod|| -HLE -HLEB" B" * f`u \NOKB \NOKB yu`{ yu`{nbh nbh jd|| jd|| |ynl{ud |ynl{ud

\@F[SDUN\ ]dobch ]do bch * f`u OL OL*J\ *J\ kd{ kd{dd WK@B WK@BZZ * un unt~ t~n| n|{{ mnun j|dobch j|dobc h fu`j Jd{ode Eb`bhf`ujd{bl| [``oe`} * f`u J\ kd{d kd{d -n}djyon -n}djyon ~|bhc j|dobch j|dobch"" ydbu yd bu|n |nt| t|bj bj * -Eb`l`hk~l{`u * Sb{`o b{`ok k S`o| `o|gb" gb" * f`u jd| jd||| |ynl{u |ynl{udd WK@B WK@BZZ Udhk`o Udh k`oym ym Rd|~ d|~bb l`k l`knn * WK@B K@BZZ k`sho`dk Jd Jd{o {ode de l` l`kn kn dhk SJ[\D sdvnon{ {``oe`} U[Dobch doc`ub{mj `f J\FDL[| J\FDL[| -h`eon(`uc - h`eon(`uc"" * CL*J\ dhk OL*J\ OL*J\ kd{d kd{d Cnhnkd{d Cnhnk d{d N}yun N}yun||b`hb ||b`hb|{ |{ -cnhnkd{d(l`j -cnhnkd{d(l`j"" * f`u OL*J\ OL*J\ dhk bhf~|b`h bhf~|b`h J\ kd{d( kd{d( J\ Dobch -Kdvbk Cudh{ * ^l`hh(nk~ ^l`hh(nk~"" * f`u mbcm un|`o~{b un|`o~{b`h `h jd|| |ynl{udo |ynl{udo kd{d WK@B WK@BZZ OLJ\SDUY OLJ\S DUY -YHHO" * f`u yu`{n`jbl| dhk jn{de`o`jbl| OL*J\ kd{d -m{{y1hluu(yho(c`v|`f{sdun -m{{y1hluu(yho(c`v|`f{sdun"" Lmu`jD Lmu `jDobc obch h -[mnuj` [mnuj`"" * bhlo~k bhlo~knk nk bh \bnvn dhk Eb`|bnvn Eb`|bnvn ydlgd ydlgdcn cn f`u OL*J\ dhk OL*J\*J OL*J\*J\ \ kd{d YN[DO YN[ DO * Yny{bkn Nonjnh{ Dobchjnh{ f`u OL*J\ kd{d -m{{y1ynbsdhc(fmlul(`ucun|ndulm*yu`anl{(m{jo -m{{y1ynbsdhc(fmlul(`ucun|ndulm*yu`anl{(m{jo"" Jdugnu Jdu gnuV Vbns -DEB\lbn} DEB\lbn}"" * f`u OL*J\ dhk JDOKB kd{d yndg yblgbhc dhk dobchjnh{ dhk |{d{b|{bl|

\@F[SDUN\ ‥

Jd{mKD d{mKDJ JY -Gnb` ^hbvnu|b{r" ^hbvnu|b{r" * f`u CL*J\/ CL*J\/ OL*J\ OL*J\// LN*J\ LN*J\ kd{d kd{d sb{m Jd{mnj Jd{mnjd{b d{bld ld |`~uln l`kn W K@BZ



HdjnOn|| Hdj nOn|| * f`u JD JDOKB OKB J\ J\ dhk F[ F[*J\ *J\ kd{d kd{d sb{m sb{m ADV ADVD |`~uln l`kn WK W K@BZ



LYJ Jd{Ode {``oe`} -A LYJ -A Ob|{cdu{nh" Ob|{cdu{nh" * f`u OL*J\/ OL*J\/ yu`{n`jbl|/ yu`{n`jbl|/ jn{de`o`j n{de`o`jbl| bl| dhk {bjn |nub |nubn| n| kd{d kd{d ' |`~uln |`~uln l`kn(



CD\Y -cnhnkubf{(`uc" -cnhnkubf{(`uc" * f`u CL*J L*J\ \ dobchjnh{ dobchjnh{



Dhdorq Dh dorqnuY nuYu` u` -\ynl{udoS`ug| \ynl{udoS`ug|"" * f`u dobchj dobchjnh{ `f CL*J\ CL*J\ kd{d



jn{d*e -Vodkbjbu -Vodkbjbu Obgbl" Obgbl" * f`u dob dobchj chjnh{ nh{ `f OL*J\ kd{d sb{m yr{m`h |`~uln l`kn -c` \VH \VH""



|ynl{l` |yn l{l`hh hhnl{ nl{ -JB[ B["" * f`u dobchjn dobchjnh{ h{ `f CL*J\ CL*J\ kd{d ~|bhc DJ DJKB\ KB\ f`u knl`hv`o~{b knl`hv`o~{b`h `h



Lmnh` Lm nh`j j] Yu`fbonu -Lmnh`j} -Lmnh`j}"" * f`u ebhhbhc ebhhbhc dhk dob dobchj chjnh{ nh{ `f HJU HJU |bchdo| -' KE KE |ndulm" |ndulm"



Gh`sB{Doo Gh`s B{Doo Jn{de` n{de`o`j o`jbl| bl| Nk Nkb{b b{b`h| `h| -Eb`Udk - Eb`Udk"" * sb{m Bh{noobE~lgn{ Bh{noobE~lgn{ e~lg e~lgn{bhc n{bhc dhk ebhhbhc ebhhbhc `f HJ HJU kd{d kd{d -' KE |ndulm"



J\*] \*]nonud nonud{`u {`u -J\JN[UB] J\JN[UB]"" * Dkvd Dkvdhlnk hlnk Doc`ub{ Doc`ub{mj mj| | f`u OL OLJ\ J\ Kd{d Yu`ln||bhc Yu`ln||bhc -Jdul` U~bagnh"



@EB*Sduy -^ -^ [n}d|" [n}d|" * @ukn uknunk unk Ebanl{bvn Ebanl{bvn Bh{nuy Bh{nuy`od{n `od{nk k Sduybh duybhc c f`u OL*J OL*J\ \ kd{d kd{d WY WYKFZ

[ M D H G R @ ^ F @U @ U R @ ^ U Y D [B [B N H L N

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